Semblans: automated assembly and processing of RNA-seq data.

ABSTRACT:

Motivation

Recent advancements in parallel sequencing methods have precipitated a surge in publicly available short-read sequence data. This has encouraged the development of novel computational tools for the de novo assembly of transcriptomes from RNA-seq data. Despite the availability of these tools, performing an end-to-end transcriptome assembly remains a programmatically involved task necessitating familiarity with best practices. Aside from quality control steps, including error correction, adapter trimming, and chimera filtration needing to be correctly used, moving data between programs often requires manual reformatting or restructuring, which can further impede throughput. Here, we introduce Semblans, a tool for streamlining the assembly process that efficiently and consi

SUBMITTER: Woodcock-Girard MD 

PROVIDER: S-EPMC11748423 | biostudies-literature | 2024 Dec

REPOSITORIES: biostudies-literature