Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment.

ABSTRACT: SpatialFeatureExperiment is a Bioconductor package that leverages the versatility of Simple Features for spatial data analysis and SpatialExperiment for single-cell -omics to provide an expansive and convenient S4 class for working with spatial -omics data. SpatialFeatureExperiment can be used to store and analyze a variety of spatial -omics data types, including data from the Visium, Xenium, MERFISH, SeqFish, and Slide-seq platforms, bringing spatial operations to the SingleCellExperiment ecosystem.

SUBMITTER: Moses L 

PROVIDER: S-EPMC11888365 | biostudies-literature | 2025 Feb

REPOSITORIES: biostudies-literature