GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.

ABSTRACT: Converting multiomics datasets into gene sets facilitates data integration that leads to knowledge discovery. Although there are tools developed to analyze gene sets, only a few offer the management of gene sets from multiple sources. GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene coexpression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets, all in one place. GeneSetCart supports the upload of single or multiple gene sets, as well as fetching gene sets by searching PubMed for genes comentioned with terms in publications. Venn diagrams, heatmaps, Uniform Manifold Appr

SUBMITTER: Marino GB 

PROVIDER: S-EPMC11984350 | biostudies-literature | 2025 Jan

REPOSITORIES: biostudies-literature