Integrating multi-omic data to identify key genes and pathways involved in rice bacterial leaf streak disease.

ABSTRACT: Bacterial leaf streak disease (BLS) is caused by Xanthomonas oryzae pv. oryzicola (Xoc), which represents a significant threat to rice (Oryza sativa) crops. The objective of the present work is to identify the genetic regions and signaling pathways that contribute to the infection process caused by Xoc. The study employs RNA-Seq data to investigate gene co-expression networks, with a particular emphasis on essential genes involved in ribosome production. Furthermore, the research investigates codon usage patterns in the context of gene expression and translation processes. The findings highlight the importance of the apoplastic pathway, which plays a crucial role in the infection of plants through the breach of the epidermis in their aerial structures. Bioinformatics tools, including STRIN

SUBMITTER: Saeed PA 

PROVIDER: S-EPMC12217088 | biostudies-literature | 2025 Jul

REPOSITORIES: biostudies-literature