Sparse Bayesian Group Factor Model for Feature Interactions in Multiple Count Tables Data.

ABSTRACT: Group factor models have been developed to infer relationships between multiple co-occurring multivariate continuous responses. Motivated by complex count data from multi-domain microbiome studies using next-generation sequencing, we develop a sparse Bayesian group factor model (Sp-BGFM) for multiple count table data that captures the interaction between microorganisms in different domains. Sp-BGFM uses a rounded kernel mixture model using a Dirichlet process (DP) prior with log-normal mixture kernels for count vectors. A group factor model is used to model the covariance matrix of the mixing kernel that describes microorganism interaction. We construct a Dirichlet-Horseshoe (Dir-HS) shrinkage prior and use it as a joint prior for factor loading vectors. Joint sparsity induced by a Dir-HS

SUBMITTER: Zhang S 

PROVIDER: S-EPMC12266606 | biostudies-literature | 2025

REPOSITORIES: biostudies-literature