EASYstrata: an all-in-one workflow for genome annotation and genomic divergence analysis.

ABSTRACT: New reference genomes and transcriptomes are increasingly available across the tree of life, opening new avenues to tackle exciting questions. However, there are still challenges associated with annotating genomes and inferring evolutionary processes and with a lack of methodological standardisation. Here, we propose a new workflow designed for evolutionary analyses to overcome these challenges, facilitating the detection of recombination suppression and its consequences in terms of rearrangements and transposable element accumulation. To do so, we assemble multiple bioinformatic steps in a single easy-to-use workflow. We combine state-of-the-art tools to detect transposable elements, annotate genomes, infer gene orthology relationships, compute divergence between sequences, infer evolutio

SUBMITTER: Rougemont Q 

PROVIDER: S-EPMC12390748 | biostudies-literature | 2025 Sep

REPOSITORIES: biostudies-literature