Mining the neuroimaging literature.

ABSTRACT: Automated analysis of the biomedical literature (literature mining) offers a rich source of insights. However, such analysis requires collecting a large number of articles and extracting and processing their content. This task is often prohibitively difficult and time-consuming. Here, we provide tools to easily collect, process, and annotate the biomedical literature. In particular, https://neuroquery.github.io/pubget/pubget.html is an efficient and reliable command-line tool for downloading articles in bulk from PubMed Central, extracting their contents and metadata into convenient formats, and extracting and analyzing information such as stereotactic brain coordinates. https://jeromedockes.github.io/labelbuddy/labelbuddy/current/ is a lightweight local application for annotating t

SUBMITTER: Dockes J 

PROVIDER: S-EPMC12425474 | biostudies-literature | 2025 Sep

REPOSITORIES: biostudies-literature