CompareM2 is a genomes-to-report pipeline for comparing microbial genomes.

ABSTRACT:

Summary

Here, we present CompareM2, a genomes-to-report pipeline for comparative analysis of bacterial and archaeal genomes derived from isolates and metagenomic assemblies. CompareM2 is easy to install and operate, designed in such a way that the user can install the complete software in one step and launch all analyses on a set of microbial genomes (bacterial and archaeal) in a single action. The central results generated via the CompareM2 workflow are emphasized in a portable dynamic report document.

Availability and implementation

CompareM2 is a free software that is scalable to a range of project sizes, and welcomes modifications and pull requests from the community on its Git repository at https://github.com/cmkobel/comparem2.

SUBMITTER: Kobel CM 

PROVIDER: S-EPMC12466929 | biostudies-literature | 2025 Sep

REPOSITORIES: biostudies-literature