Determining accurate conformational ensembles of intrinsically disordered proteins at atomic resolution.

ABSTRACT: Determining accurate atomic resolution conformational ensembles of intrinsically disordered proteins (IDPs) is extremely challenging. Molecular dynamics (MD) simulations provide atomistic conformational ensembles of IDPs, but their accuracy is highly dependent on the quality of physical models, or force fields, used. Here, we demonstrate how to determine accurate atomic resolution conformational ensembles of IDPs by integrating all-atom MD simulations with experimental data from nuclear magnetic resonance (NMR) spectroscopy and small-angle x-ray scattering (SAXS) with a simple, robust and fully automated maximum entropy reweighting procedure. We demonstrate that in favorable cases, where IDP ensembles obtained from different MD force fields are in reasonable initial agreement with experime

SUBMITTER: Borthakur K 

PROVIDER: S-EPMC12514307 | biostudies-literature | 2025 Oct

REPOSITORIES: biostudies-literature