Screening and machine learning-based prediction of translation-enhancing peptides that reduce ribosomal stalling in <i>Escherichia coli</i>.

ABSTRACT: We previously reported that the nascent SKIK peptide enhances translation and alleviates ribosomal stalling caused by arrest peptides (APs) such as SecM and polyproline when positioned immediately upstream of the APs in both Escherichia coli in vivo and in vitro translation systems. In this study, we conducted a comprehensive screening of translation-enhancing peptides (TEPs) using a randomized artificial tetrapeptide library. The screening focused on the ability of the peptides to suppress SecM AP-induced translational stalling in E. coli cells. We identified TEPs exhibiting a range of translation-enhancing activities. In vitro translation analysis suggested that the fourth amino acid in the tetrapeptide influences the reduction of SecM AP-mediated stalling. Ad

SUBMITTER: Ojima-Kato T 

PROVIDER: S-EPMC12551147 | biostudies-literature | 2026 Jan

REPOSITORIES: biostudies-literature