Nextpie: a web-based reporting tool and database for reproducible nextflow pipelines.

ABSTRACT:

Motivation

High-throughput genomic data analysis consists of the inexorably intertwined inputs and outputs of a vast array of bioinformatic analysis tools. To guarantee streamlined and reproducible analyses, the often complex data analysis pipelines need to be run using workflow management tools. Nextflow is one popular tool commonly used to automate such pipelines. Nextflow records key pipeline data, such as the submission time, start time, completion time, CPU usage, memory usage, and disk usage for each task run. These data are stored in log files, often scattered across a file system. Therefore, aggregating information about resource usage critical for the optimization of Nextflow pipelines and improving reproducibility, as well as parsing and managing such log data, can quickl

SUBMITTER: Ghimire B 

PROVIDER: S-EPMC12574971 | biostudies-literature | 2025

REPOSITORIES: biostudies-literature