CNPS.cycle: streamlining shotgun metagenomic data analysis for biogeochemical cycles.

ABSTRACT: Shotgun metagenomic data analysis for investigating biogeochemical cycles in the environment remains challenging, primarily due to the steep learning curve, intensive time investment, and high computational demands, all of which pose significant barriers for many researchers. We present a new R package called "CNPS.cycle," designed to streamline the interpretation of shotgun metagenomic data related to biogeochemical processes, complete with visually informative outputs. This comprehensive package comprises four distinct analysis modules, focused on carbon, nitrogen, phosphorus, and sulfur cycling. Users can easily utilize the package by uploading annotation result files derived from shotgun metagenomic data, specifically those based on the Kyoto Encyclopedia of Genes and Genomes and the N

SUBMITTER: Yue Z 

PROVIDER: S-EPMC12625701 | biostudies-literature | 2025 Nov

REPOSITORIES: biostudies-literature