Tskit_arg_visualizer: interactive plotting of ancestral recombination graphs.

ABSTRACT:

Motivation

Ancestral recombination graphs (ARGs) are a complete representation of the genetic relationships between recombining lineages and are of central importance in population genetics. Recent breakthroughs in simulation and inference methods have led to a surge of interest in ARGs. However, understanding how best to take advantage of the graphical structure of ARGs remains an open question for researchers. Here, we introduce tskit_arg_visualizer, a Python package for programmatically drawing ARGs using the interactive D3.js visualization library.

Results

We highlight the usefulness of this visualization tool for both teaching ARG concepts and exploring ARGs inferred from empirical datasets.

Availability and implementation

The latest stable version of tskit_arg_v

SUBMITTER: Kitchens J 

PROVIDER: S-EPMC12701794 | biostudies-literature | 2025

REPOSITORIES: biostudies-literature