Single-cell dissection of PTM-related networks reveals an immunosuppressed osteosarcoma ecosystem.

ABSTRACT:

Background

Osteosarcoma remains lethal for many patients with metastatic or relapsed disease. Post-translational modifications (PTMs) regulate protein signaling and may shape the tumor microenvironment and clinical behavior in osteosarcoma, but PTM-anchored transcriptomic programs are as yet not well defined.

Methods

We integrated single-cell RNA sequencing from GSE162454 with curated PTM and immune gene sets to build a PTM-related framework for osteosarcoma. Tumor cell differentially expressed genes were intersected with PTM and immune repertoires to derive candidates. A PTM-related prognostic score was trained in TARGET-OS and validated in GSE21257 and GSE16091. Immune infiltration and microenvironment features were profiled using ssGSEA, Estimation of STromal and Immune c

SUBMITTER: Chen J 

PROVIDER: S-EPMC12756076 | biostudies-literature | 2025

REPOSITORIES: biostudies-literature