CAMP: a modular metagenomics analysis system for integrated multistep data exploration.

ABSTRACT: Computational analysis of large-scale metagenomics sequencing datasets provides valuable isolate-level taxonomic and functional insights from complex microbial communities. However, the ever-expanding ecosystem of metagenomics-specific methods and file formats makes designing scalable workflows and seamlessly exploring output data increasingly challenging. Although one-click bioinformatics pipelines can help organize these tools into workflows, they face compatibility and maintainability challenges that can prevent replication. To address the gap in easily extensible yet robustly distributable metagenomics workflows, we have developed the Core Analysis Modular Pipeline (CAMP), a module-based metagenomics analysis system written in Snakemake, with a standardized module and directory archite

SUBMITTER: Mak L 

PROVIDER: S-EPMC12809600 | biostudies-literature | 2026 Mar

REPOSITORIES: biostudies-literature