RNA-SeqEZPZ: a point-and-click pipeline for comprehensive transcriptomics analysis with interactive visualizations.

ABSTRACT:

Background

RNA sequencing (RNA-seq) analysis has become a routine task in numerous genomic research labs, driven by the reduced cost of bulk RNA sequencing experiments. These studies generate billions of reads that require easy-to-run, comprehensive, and reproducible analysis. However, many labs rely on in-house scripts, which can be challenging for bench scientists to use and hinder standardization and reproducibility. While existing RNA-seq pipelines attempt to address these challenges, they often lack a complete end-to-end user interface.

Findings

To bridge this gap, we developed RNA-SeqEZPZ, an automated pipeline with a user-friendly point-and-click interface, enabling rigorous and reproducible RNA-seq analysis without requiring programming or bioinformatics expertise. F

SUBMITTER: Taslim C 

PROVIDER: S-EPMC12857227 | biostudies-literature | 2026 Jan

REPOSITORIES: biostudies-literature