VST-DAVis: an R Shiny application and web-browser for spatial transcriptomics data analysis and visualization.

ABSTRACT:

Summary

Visium HD Spatial Transcriptomics Data Analysis and Visualization (VST-DAVis) is an interactive, R Shiny application and web browser designed for intuitive analysis of spatial transcriptomics data generated using the 10x Genomics Visium HD platform. This user-friendly tool empowers researchers, particularly those without programming expertise, to perform end-to-end spatial transcriptomics analysis through a streamlined graphical interface. The platform is capable of handling both single and multiple samples, enabling comparative analyses across diverse biological conditions or replicates. It accepts various input formats including both H5 and matrix-based files from Space Ranger and outputs high-quality graphics from various visualization tools. VST-DAVis integrates several

SUBMITTER: Jagadesan S 

PROVIDER: S-EPMC12866912 | biostudies-literature | 2026

REPOSITORIES: biostudies-literature