In silico activation of KcsA K+ channel by lateral forces applied to the C-termini of inner helices.

ABSTRACT: Crystallographic studies of K(+) channels in the closed (KcsA) and open (MthK) states suggest that Gly(99) (KcsA numbering) in the inner helices serves as a gating hinge during channel activation. However, some P-loop channels have larger residues in the corresponding position. The comparison of x-ray structures of KcsA and MthK shows that channel activation alters backbone torsions and helical H-bonds in residues 95-105. Importantly, the changes in Gly(99) are not the largest ones. This raises questions about the mechanism of conformational changes upon channel gating. In this work, we have built a model of the open KcsA using MthK as a template and simulated opening and closing of KcsA by constraining C-ends of the inner helices at a gradually changing distance from the pore axis without

SUBMITTER: Tikhonov DB 

PROVIDER: S-EPMC1304559 | biostudies-literature | 2004 Sep

REPOSITORIES: biostudies-literature