Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection.

ABSTRACT:

Background

The mutation spectra of the TP53 gene and other tumor suppressors contain multiple hotspots, i.e., sites of non-random, frequent mutation in tumors and/or the germline. The origin of the hotspots remains unclear, the general view being that they represent highly mutable nucleotide contexts which likely reflect effects of different endogenous and exogenous factors shaping the mutation process in specific tissues. The origin of hotspots is of major importance because it has been suggested that mutable contexts could be used to infer mechanisms of mutagenesis contributing to tumorigenesis.

Results

Here we apply three independent tests, accounting for non-uniform base compositions in synonymous and non-synonymous sites, to test whether the hotspots emerge via selectio

SUBMITTER: Glazko GV 

PROVIDER: S-EPMC1403748 | biostudies-literature | 2006 Jan

REPOSITORIES: biostudies-literature