Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance.

ABSTRACT: Several "head-to-head" (or "bidirectional") gene pairs have been studied in individual experiments, but genome-wide analysis of this gene organization, especially in terms of transcriptional correlation and functional association, is still insufficient. We conducted a systematic investigation of head-to-head gene organization focusing on structural features, evolutionary conservation, expression correlation and functional association. Of the present 1,262, 1,071, and 491 head-to-head pairs identified in human, mouse, and rat genomes, respectively, pairs with 1- to 400-base pair distance between transcription start sites form the majority (62.36%, 64.15%, and 55.19% for human, mouse, and rat,respectively) of each dataset, and the largest group is always the one with a transcription start si

SUBMITTER: Li YY 

PROVIDER: S-EPMC1487180 | biostudies-literature | 2006 Jul

REPOSITORIES: biostudies-literature