Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri.
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ABSTRACT:
SUBMITTER: Kulkarni PR
PROVIDER: S-EPMC1488887 | biostudies-literature | 2006
REPOSITORIES: biostudies-literature
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Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri.
Kulkarni Prajna R PR Cui Xiaohui X Williams Joshua W JW Stevens Ann M AM Kulkarni Rahul V RV
Nucleic acids research 20060705 11
The role of small RNAs as critical components of global regulatory networks has been highlighted by several recent studies. An important class of such small RNAs is represented by CsrB and CsrC of Escherichia coli, which control the activity of the global regulator CsrA. Given the critical role played by CsrA in several bacterial species, an important problem is the identification of CsrA-regulating small RNAs. In this paper, we develop a computer program (CSRNA_FIND) designed to locate potentia ...[more]
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