Generation of non-genomic oligonucleotide tag sequences for RNA template-specific PCR.

ABSTRACT:

Background

In order to overcome genomic DNA contamination in transcriptional studies, reverse template-specific polymerase chain reaction, a modification of reverse transcriptase polymerase chain reaction, is used. The possibility of using tags whose sequences are not found in the genome further improves reverse specific polymerase chain reaction experiments. Given the absence of software available to produce genome suitable tags, a simple tool to fulfill such need was developed.

Results

The program was developed in Perl, with separate use of the basic local alignment search tool, making the tool platform independent (known to run on Windows XP and Linux). In order to test the performance of the generated tags, several molecular experiments were performed. The results show t

SUBMITTER: Pinto FL 

PROVIDER: S-EPMC1526424 | biostudies-literature | 2006 Jul

REPOSITORIES: biostudies-literature