Maize haplotype with a helitron-amplified cytidine deaminase gene copy.

ABSTRACT:

Background

Genetic maps are based on recombination of orthologous gene sequences between different strains of the same species. Therefore, it was unexpected to find extensive non-collinearity of genes between different inbred strains of maize. Interestingly, disruption of gene collinearity can be caused among others by a rolling circle-type copy and paste mechanism facilitated by Helitrons. However, understanding the role of this type of gene amplification has been hampered by the lack of finding intact gene sequences within Helitrons.

Results

By aligning two haplotypes of the z1C1 locus of maize we found a Helitron that contains two genes, one encoding a putative cytidine deaminase and one a hypothetical protein with part of a 40S ribosomal protein. The cytidine deaminase g

SUBMITTER: Xu JH 

PROVIDER: S-EPMC1657028 | biostudies-literature | 2006 Nov

REPOSITORIES: biostudies-literature