Evolution of motif variants and positional bias of the cyclic-AMP response element.

ABSTRACT:

Background

Transcription factors regulate gene expression by interacting with their specific DNA binding sites. Some transcription factors, particularly those involved in transcription initiation, always bind close to transcription start sites (TSS). Others have no such preference and are functional on sites even tens of thousands of base pairs (bp) away from the TSS. The Cyclic-AMP response element (CRE) binding protein (CREB) binds preferentially to a palindromic sequence (TGACGTCA), known as the canonical CRE, and also to other CRE variants. CREB can activate transcription at CREs thousands of bp away from the TSS, but in mammals CREs are found far more frequently within 1 to 150 bp upstream of the TSS than in any other region. This property is termed positional bias. The streng

SUBMITTER: Smith B 

PROVIDER: S-EPMC1796609 | biostudies-literature | 2007 Feb

REPOSITORIES: biostudies-literature