ESTree db: a tool for peach functional genomics.

ABSTRACT:

Background

The ESTree db http://www.itb.cnr.it/estree/ represents a collection of Prunus persica expressed sequenced tags (ESTs) and is intended as a resource for peach functional genomics. A total of 6,155 successful EST sequences were obtained from four in-house prepared cDNA libraries from Prunus persica mesocarps at different developmental stages. Another 12,475 peach EST sequences were downloaded from public databases and added to the ESTree db. An automated pipeline was prepared to process EST sequences using public software integrated by in-house developed Perl scripts and data were collected in a MySQL database. A php-based web interface was developed to query the database.

Results

The ESTree db version as of April 2005 encompasses 18,630 sequences representing eight

SUBMITTER: Lazzari B 

PROVIDER: S-EPMC1866392 | biostudies-literature | 2005 Dec

REPOSITORIES: biostudies-literature