Dataset Information

Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup.

ABSTRACT: We have sequenced the complete mitochondrial genome of the extinct American mastodon (Mammut americanum) from an Alaskan fossil that is between 50,000 and 130,000 y old, extending the age range of genomic analyses by almost a complete glacial cycle. The sequence we obtained is substantially different from previously reported partial mastodon mitochondrial DNA sequences. By comparing those partial sequences to other proboscidean sequences, we conclude that we have obtained the first sequence of mastodon DNA ever reported. Using the sequence of the mastodon, which diverged 24-28 million years ago (mya) from the Elephantidae lineage, as an outgroup, we infer that the ancestors of African elephants diverged from the lineage leading to mammoths and Asian elephants approximately 7.6 mya and that mammoths and Asian elephants diverged approximately 6.7 mya. We also conclude that the nuclear genomes of the African savannah and forest elephants diverged approximately 4.0 mya, supporting the view that these two groups represent different species. Finally, we found the mitochondrial mutation rate of proboscideans to be roughly half of the rate in primates during at least the last 24 million years.

SUBMITTER: Rohland N

PROVIDER: S-EPMC1925134 | biostudies-literature | 2007 Aug

REPOSITORIES: biostudies-literature

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Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup.

Rohland Nadin N Malaspinas Anna-Sapfo AS Pollack Joshua L JL Slatkin Montgomery M Matheus Paul P Hofreiter Michael M

PLoS biology 20070801 8

We have sequenced the complete mitochondrial genome of the extinct American mastodon (Mammut americanum) from an Alaskan fossil that is between 50,000 and 130,000 y old, extending the age range of genomic analyses by almost a complete glacial cycle. The sequence we obtained is substantially different from previously reported partial mastodon mitochondrial DNA sequences. By comparing those partial sequences to other proboscidean sequences, we conclude that we have obtained the first sequence of m ...[more]

PMID: 17676977

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Project description:Hilly regions around the world are one of the most vulnerable places for inhabitation, where landslides represent a permanent threat for their population. In some particular cases, in the past, due to their topographic features, areas affected by massive landslides served a real opportunity for the location of strategic and fortified settlements. In this study, we have extended a previous approach of correlation between landslides and archaeological heritage, adding 14 new representative case studies of landslided hillforts, a new period with landslided hillforts, and a new typology of relationship (landslided tumuli) for establishing relative chronologies for landslide inventories. The landslide mapping presented here supplements a previous inventory, which now has 1211 landslides, and it is based on the interpretation of high-resolution DEMs, geomorphometric derivatives, remote sensing images, and field validation. For one of the most characteristic sites (Băiceni settlement, Iaşi County), we used Electrical Resistivity Tomography (ERT) to assess the geometry of the compound and complex landslides. The current approach allowed us to acquire a more accurate relative chronology of landslide activity during the Holocene and Upper Pleistocene, and more importantly, to establish the pattern of landslides evolution in the Moldavian Plateau, North-Eastern Romania. The relict landslides are Lateglacial and Lower Holocene, the old landslides are post-Holocene Climatic Optimum and pre-Medieval, while the recent landslides are post-Medieval. The landslide magnitude decreased continuously, the new events being retrogressive reactivations of earlier events scarps and landslide bodies (as shown by the ERT data). Further studies on absolute dating will improve the relative chronology. Still, while not all the landslides can be dated, the methodology that we describe can be applied to increase the spatial density of the relative chronology. The presented approach can be used in other regions all over the world to establish the relative age of landslide inventories when archaeological topography can be related to landslide topography.

Dataset Information

Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup.

Publications

Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup.

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