Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization.

ABSTRACT:

Background

Chromatin remodeling, histone modifications and other chromatin-related processes play a crucial role in gene regulation. A very useful technique to study these processes is chromatin immunoprecipitation (ChIP). ChIP is widely used for a few model systems, including Arabidopsis, but establishment of the technique for other organisms is still remarkably challenging. Furthermore, quantitative analysis of the precipitated material and normalization of the data is often underestimated, negatively affecting data quality.

Results

We developed a robust ChIP protocol, using maize (Zea mays) as a model system, and present a general strategy to systematically optimize this protocol for any type of tissue. We propose endogenous controls for active and for repressed chromatin

SUBMITTER: Haring M 

PROVIDER: S-EPMC2077865 | biostudies-literature | 2007 Sep

REPOSITORIES: biostudies-literature