VitisExpDB: a database resource for grape functional genomics.

ABSTRACT:

Background

The family Vitaceae consists of many different grape species that grow in a range of climatic conditions. In the past few years, several studies have generated functional genomic information on different Vitis species and cultivars, including the European grape vine, Vitis vinifera. Our goal is to develop a comprehensive web data source for Vitaceae.

Description

VitisExpDB is an online MySQL-PHP driven relational database that houses annotated EST and gene expression data for V. vinifera and non-vinifera grape species and varieties. Currently, the database stores approximately 320,000 EST sequences derived from 8 species/hybrids, their annotation (BLAST top match) details and Gene Ontology based structured vocabulary. Putative homologs for each EST in other specie

SUBMITTER: Doddapaneni H 

PROVIDER: S-EPMC2359749 | biostudies-literature | 2008 Feb

REPOSITORIES: biostudies-literature