Linking Cytoscape and the corynebacterial reference database CoryneRegNet.

ABSTRACT:

Background

Recently, the research community has seen an influx of data relating to transcriptional regulatory interactions of Corynebacteria, organisms that are highly relevant to fields of systems biology, biotechnology, and human medicine. Information derived from DNA microarray experiments, computational predictions, and literature has opened the way for the graph-based analysis, visualization, and reconstruction of transcriptional regulatory networks across entire organisms. The reference database for corynebacterial gene regulatory networks CoryneRegNet provides methods for data storage and data exchange in a well-structured manner. Additional information on the model organism Escherichia coli K12 obtained from RegulonDB has been integrated. Generally, gene regulatory networks

SUBMITTER: Baumbach J 

PROVIDER: S-EPMC2375448 | biostudies-literature | 2008 Apr

REPOSITORIES: biostudies-literature