The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

ABSTRACT: Whole-genome sequencing has been skewed toward bacterial pathogens as a consequence of the prioritization of medical and veterinary diseases. However, it is becoming clear that in order to accurately measure genetic variation within and between pathogenic groups, multiple isolates, as well as commensal species, must be sequenced. This study examined the pangenomic content of Escherichia coli. Six distinct E. coli pathovars can be distinguished using molecular or phenotypic markers, but only two of the six pathovars have been subjected to any genome sequencing previously. Thus, this report provides a seminal description of the genomic contents and unique features of three unsequenced pathovars, enterotoxigenic E. coli, enteropathogenic E. coli, and enteroaggregative E. coli. We also determi

SUBMITTER: Rasko DA 

PROVIDER: S-EPMC2566221 | biostudies-literature | 2008 Oct

REPOSITORIES: biostudies-literature