SQUAT: A web tool to mine human, murine and avian SAGE data.

ABSTRACT:

Background

There is an increasing need in transcriptome research for gene expression data and pattern warehouses. It is of importance to integrate in these warehouses both raw transcriptomic data, as well as some properties encoded in these data, like local patterns.

Description

We have developed an application called SQUAT (SAGE Querying and Analysis Tools) which is available at: http://bsmc.insa-lyon.fr/squat/. This database gives access to both raw SAGE data and patterns mined from these data, for three species (human, mouse and chicken). This database allows to make simple queries like "In which biological situations is my favorite gene expressed?" as well as much more complex queries like: <

SUBMITTER: Leyritz J 

PROVIDER: S-EPMC2567996 | biostudies-literature | 2008 Sep

REPOSITORIES: biostudies-literature