SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences.
Ontology highlight
ABSTRACT: Unlabelled
The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named "SNP-Flankplus" to provide a web environment for retrieval of SNP flanking sequences from both the dbSNP and the nucleotide databases of NCBI. Two SNP ID types, rs# and ss#, are acceptable for querying SNP flanking sequences with adjustable lengths for at least sixteen organisms.Availability
This software is freely available at http://bio.kuas.edu.tw/snp-flankplus/
SUBMITTER: Yang CH
PROVIDER: S-EPMC2637961 | biostudies-literature | 2008
REPOSITORIES: biostudies-literature
Publications
SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences.
Yang Cheng-Hong CH Cheng Yu-Huei YH Chuang Li-Yeh LY Chang Hsueh-Wei HW
Bioinformation 20081206 4
<h4>Unlabelled</h4>The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named "SNP-Flankplus" to provide a web environment for retrieval of SNP flanking sequences from both the dbSNP and the nucleotide databases of NCBI. Two SNP ID types, rs# and ss#, are acceptable for querying SNP flanking sequences with adjustable lengths for at least sixteen organis ...[more]
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