Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes.

ABSTRACT: The nematode Caenorhabditis elegans is a popular model system in genetics, not least because a majority of human disease genes are conserved in C. elegans. To generate a comprehensive inventory of its expressed proteome, we performed extensive shotgun proteomics and identified more than half of all predicted C. elegans proteins. This allowed us to confirm and extend genome annotations, characterize the role of operons in C. elegans, and semiquantitatively infer abundance levels for thousands of proteins. Furthermore, for the first time to our knowledge, we were able to compare two animal proteomes (C. elegans and Drosophila melanogaster). We found that the abundances of orthologous proteins in metazoans correlate remarkably well, better than protein abundance versus transcript abundance wi

SUBMITTER: Schrimpf SP 

PROVIDER: S-EPMC2650730 | biostudies-literature | 2009 Mar

REPOSITORIES: biostudies-literature