SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.

ABSTRACT: SNPLogic (http://www.snplogic.org) brings together single nucleotide polymorphism (SNP) information from numerous sources to provide a comprehensive SNP selection, annotation and prioritization system for design and analysis of genotyping projects. SNPLogic integrates information about the genetic context of SNPs (gene, chromosomal region, functional location, haplotypes tags and overlap with transcription factor binding sites, splicing sites, miRNAs and evolutionarily conserved regions), genotypic data (allele frequencies per population and validation method), coverage of commercial arrays (ParAllele, Affymetrix and Illumina), functional predictions (modeled on structure and sequence) and connections or established associations (biological pathways, gene ontology terms and OMIM disease te

SUBMITTER: Pico AR 

PROVIDER: S-EPMC2686434 | biostudies-literature | 2009 Jan

REPOSITORIES: biostudies-literature