Cancer outlier detection based on likelihood ratio test.

ABSTRACT:

Motivation

Microarray experiments can be used to help study the role of chromosomal translocation in cancer development through cancer outlier detection. The aim is to identify genes that are up- or down-regulated in a subset of cancer samples in comparison to normal samples.

Results

We propose a likelihood-based approach which targets detecting the change of point in mean expression intensity in the group of cancer samples. A desirable property of the proposed approach is the availability of theoretical significance-level results. Simulation studies showed that the performance of the proposed approach is appealing in terms of both detection power and false discovery rate. And the real data example also favored the likelihood-based approach in terms of the biological relevan

SUBMITTER: Hu J 

PROVIDER: S-EPMC2732272 | biostudies-literature | 2008 Oct

REPOSITORIES: biostudies-literature