Recombination in West Nile Virus: minimal contribution to genomic diversity.

ABSTRACT: Recombination is known to play a role in the ability of various viruses to acquire sequence diversity. We consequently examined all available West Nile virus (WNV) whole genome sequences both phylogenetically and with a variety of computational recombination detection algorithms. We found that the number of distinct lineages present on a phylogenetic tree reconstruction to be identical to the 6 previously reported. Statistically-significant evidence for recombination was only observed in one whole genome sequence. This recombination event was within the NS5 polymerase coding region. All three viruses contributing to the recombination event were originally isolated in Africa at various times, with the major parent (SPU116_89_B), minor parent (KN3829), and recombinant sequence (AnMg798) belo

SUBMITTER: Pickett BE 

PROVIDER: S-EPMC2763871 | biostudies-literature | 2009 Oct

REPOSITORIES: biostudies-literature