RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures.

ABSTRACT: Transcripts from mitochondrial and chloroplast DNA of land plants often undergo cytidine to uridine conversion-type RNA editing events. RESOPS is a newly built database that specializes in displaying RNA editing sites of land plant organelles on protein three-dimensional (3D) structures to help elucidate the mechanisms of RNA editing for gene expression regulation. RESOPS contains the following information: unedited and edited cDNA sequences with notes for the target nucleotides of RNA editing, conceptual translation from the edited cDNA sequence in pseudo-UniProt format, a list of proteins under the influence of RNA editing, multiple amino acid sequence alignments of edited proteins, the location of amino acid residues coded by codons under the influence of RNA editing in protein 3D struc

SUBMITTER: Yura K 

PROVIDER: S-EPMC2775959 | biostudies-literature | 2009 Nov

REPOSITORIES: biostudies-literature