The interwinding nature of protein-protein interfaces and its implication for protein complex formation.

ABSTRACT:

Motivation

Structural features at protein-protein interfaces can be studied to understand protein-protein interactions. It was noticed that in a dataset of 45 multimeric proteins the interface could either be described as flat against flat or protruding/interwound. In the latter, residues within one chain were surrounded by those in other chains, whereas in the former they were not.

Results

A simple method was developed that could distinguish between these two types with results that matched those made by a human annotator. Applying this automatic method to a large dataset of 888 structures, chains at interfaces were categorized as non-surrounded or surrounded. It was found that the surrounded set had a significantly lower folding tendency using a sequence based measure, tha

SUBMITTER: Yura K 

PROVIDER: S-EPMC2778332 | biostudies-literature | 2009 Dec

REPOSITORIES: biostudies-literature