CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

ABSTRACT:

Background

Next generation sequencing (NGS) technologies have substantially increased the sequence output while the costs were dramatically reduced. In addition to the use in whole genome sequencing, the 454 GS-FLX platform is becoming a widely used tool for biodiversity surveys based on amplicon sequencing. In order to use NGS for biodiversity surveys, software tools are required, which perform quality control, trimming of the sequence reads, removal of PCR primers, and generation of input files for downstream analyses. A user-friendly software utility that carries out these steps is still lacking.

Findings

We developed CANGS (Cleaning and Analyzing Next Generation Sequences) a flexible and user-friendly integrated software utility: CANGS is designed for amplicon based biod

SUBMITTER: Pandey RV 

PROVIDER: S-EPMC2830946 | biostudies-literature | 2010 Jan

REPOSITORIES: biostudies-literature