Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa.

ABSTRACT:

Background

With its genome sequence and other experimental attributes, Populus trichocarpa has become the model species for genomic studies of wood development. Wood is derived from secondary growth of tree stems, and begins with the development of a ring of vascular cambium in the young developing stem. The terminal region of the developing shoot provides a steep developmental gradient from primary to secondary growth that facilitates identification of genes that play specialized functions during each of these phases of growth.

Results

Using a genomic microarray representing the majority of the transcriptome, we profiled gene expression in stem segments that spanned primary to secondary growth. We found 3,016 genes that were differentially expressed during stem development

SUBMITTER: Dharmawardhana P 

PROVIDER: S-EPMC2846914 | biostudies-literature | 2010 Mar

REPOSITORIES: biostudies-literature