CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields.

ABSTRACT: The widely used CHARMM additive all-atom force field includes parameters for proteins, nucleic acids, lipids, and carbohydrates. In the present article, an extension of the CHARMM force field to drug-like molecules is presented. The resulting CHARMM General Force Field (CGenFF) covers a wide range of chemical groups present in biomolecules and drug-like molecules, including a large number of heterocyclic scaffolds. The parametrization philosophy behind the force field focuses on quality at the expense of transferability, with the implementation concentrating on an extensible force field. Statistics related to the quality of the parametrization with a focus on experimental validation are presented. Additionally, the parametrization procedure, described fully in the present article in the co

SUBMITTER: Vanommeslaeghe K 

PROVIDER: S-EPMC2888302 | biostudies-literature | 2010 Mar

REPOSITORIES: biostudies-literature