Dataset Information

Modeling biomedical experimental processes with OBI.

ABSTRACT:

Background

Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval.

Results

The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI.

Conclusion

We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components.

Availability

OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.owl.

SUBMITTER: Brinkman RR

PROVIDER: S-EPMC2903726 | biostudies-literature | 2010 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Modeling biomedical experimental processes with OBI.

Brinkman Ryan R RR Courtot Mélanie M Derom Dirk D Fostel Jennifer M JM He Yongqun Y Lord Phillip P Malone James J Parkinson Helen H Peters Bjoern B Rocca-Serra Philippe P Ruttenberg Alan A Sansone Susanna-Assunta SA Soldatova Larisa N LN Stoeckert Christian J CJ Turner Jessica A JA Zheng Jie J

Journal of biomedical semantics 20100622

<h4>Background</h4>Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval.<h4>Results</h4>The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three ...[more]

PMID: 20626927

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Dataset Information

Modeling biomedical experimental processes with OBI.

Background

Results

Conclusion

Availability

Publications

Modeling biomedical experimental processes with OBI.

Similar Datasets

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