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Automatic inference of multicellular regulatory networks using informative priors.

ABSTRACT: To fully understand the mechanisms governing animal development, computational models and algorithms are needed to enable quantitative studies of the underlying regulatory networks. We developed a mathematical model based on dynamic Bayesian networks to model multicellular regulatory networks that govern cell differentiation processes. A machine-learning method was developed to automatically infer such a model from heterogeneous data. We show that the model inference procedure can be greatly improved by incorporating interaction data across species. The proposed approach was applied to C. elegans vulval induction to reconstruct a model capable of simulating C. elegans vulval induction under 73 different genetic conditions.

SUBMITTER: Sun X 

PROVIDER: S-EPMC3024031 | biostudies-literature | 2009

REPOSITORIES: biostudies-literature

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Automatic inference of multicellular regulatory networks using informative priors.

Sun Xiaoyun X   Hong Pengyu P  

International journal of computational biology and drug design 20091003 2

To fully understand the mechanisms governing animal development, computational models and algorithms are needed to enable quantitative studies of the underlying regulatory networks. We developed a mathematical model based on dynamic Bayesian networks to model multicellular regulatory networks that govern cell differentiation processes. A machine-learning method was developed to automatically infer such a model from heterogeneous data. We show that the model inference procedure can be greatly imp  ...[more]

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