Dataset Information
X-MATE: a flexible system for mapping short read data.
Ontology highlight
ABSTRACT: Summary
Accurate and complete mapping of short-read sequencing to a reference genome greatly enhances the discovery of biological results and improves statistical predictions. We recently presented RNA-MATE, a pipeline for the recursive mapping of RNA-Seq datasets. With the rapid increase in genome re-sequencing projects, progression of available mapping software and the evolution of file formats, we now present X-MATE, an updated version of RNA-MATE, capable of mapping both RNA-Seq and DNA datasets and with improved performance, output file formats, configuration files, and flexibility in core mapping software.Availability
Executables, source code, junction libraries, test data and results and the user manual are available from http://grimmond.imb.uq.edu.au/X-MATE/.
SUBMITTER: Wood DL
PROVIDER: S-EPMC3035802 | biostudies-literature | 2011 Feb
REPOSITORIES: biostudies-literature
Publications
X-MATE: a flexible system for mapping short read data.
Bioinformatics (Oxford, England) 20110106 4
<h4>Summary</h4>Accurate and complete mapping of short-read sequencing to a reference genome greatly enhances the discovery of biological results and improves statistical predictions. We recently presented RNA-MATE, a pipeline for the recursive mapping of RNA-Seq datasets. With the rapid increase in genome re-sequencing projects, progression of available mapping software and the evolution of file formats, we now present X-MATE, an updated version of RNA-MATE, capable of mapping both RNA-Seq and ...[more]