MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.

ABSTRACT:

Unlabelled

MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses.

Availability

The MADGene resources are freely available online from http://www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data.

SUBMITTER: Baron D 

PROVIDER: S-EPMC3042180 | biostudies-literature | 2011 Mar

REPOSITORIES: biostudies-literature