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Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).


ABSTRACT: Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2)via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

SUBMITTER: Zeytun A 

PROVIDER: S-EPMC3111988 | biostudies-literature | 2011 Apr

REPOSITORIES: biostudies-literature

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Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Zeytun Ahmet A   Sikorski Johannes J   Nolan Matt M   Lapidus Alla A   Lucas Susan S   Han James J   Tice Hope H   Cheng Jan-Fang JF   Tapia Roxanne R   Goodwin Lynne L   Pitluck Sam S   Liolios Konstantinos K   Ivanova Natalia N   Mavromatis Konstantinos K   Mikhailova Natalia N   Ovchinnikova Galina G   Pati Amrita A   Chen Amy A   Palaniappan Krishna K   Ngatchou-Djao Olivier D OD   Land Miriam M   Hauser Loren L   Jeffries Cynthia D CD   Han Cliff C   Detter John C JC   Ubler Susanne S   Rohde Manfred M   Tindall Brian J BJ   Göker Markus M   Wirth Reinhard R   Woyke Tanja T   Bristow James J   Eisen Jonathan A JA   Markowitz Victor V   Hugenholtz Philip P   Klenk Hans-Peter HP   Kyrpides Nikos C NC  

Standards in genomic sciences 20110401 2


Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used  ...[more]

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