GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.

ABSTRACT:

Background

The increasing availability of HIV-host interaction datasets, including both physical and genetic interactions, has created a need for software tools to integrate and visualize the data. Because these host-pathogen interactions are extensive and interactions between human proteins are found within many different databases, it is difficult to generate integrated HIV-human interaction networks.

Results

We have developed a web-based platform, termed GPS-Prot http://www.gpsprot.org, that allows for facile integration of different HIV interaction data types as well as inclusion of interactions between human proteins derived from publicly-available databases, including MINT, BioGRID and HPRD. The software has the ability to group proteins into functional modules or prot

SUBMITTER: Fahey ME 

PROVIDER: S-EPMC3213248 | biostudies-literature | 2011 Jul

REPOSITORIES: biostudies-literature