A quantitative literature-curated gold standard for kinase-substrate pairs.

ABSTRACT: We describe the Yeast Kinase Interaction Database (KID, http://www.moseslab.csb.utoronto.ca/KID/), which contains high- and low-throughput data relevant to phosphorylation events. KID includes 6,225 low-throughput and 21,990 high-throughput interactions, from greater than 35,000 experiments. By quantitatively integrating these data, we identified 517 high-confidence kinase-substrate pairs that we consider a gold standard. We show that this gold standard can be used to assess published high-throughput datasets, suggesting that it will enable similar rigorous assessments in the future.

SUBMITTER: Sharifpoor S 

PROVIDER: S-EPMC3218865 | biostudies-literature | 2011

REPOSITORIES: biostudies-literature