Ontology highlight
ABSTRACT:
SUBMITTER: Miller CS
PROVIDER: S-EPMC3219967 | biostudies-literature | 2011
REPOSITORIES: biostudies-literature
Genome biology 20110519 5
Recovery of ribosomal small subunit genes by assembly of short read community DNA sequence data generally fails, making taxonomic characterization difficult. Here, we solve this problem with a novel iterative method, based on the expectation maximization algorithm, that reconstructs full-length small subunit gene sequences and provides estimates of relative taxon abundances. We apply the method to natural and simulated microbial communities, and correctly recover community structure from known a ...[more]