Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction.

ABSTRACT:

Background

The widely used k top scoring pair (k-TSP) algorithm is a simple yet powerful parameter-free classifier. It owes its success in many cancer microarray datasets to an effective feature selection algorithm that is based on relative expression ordering of gene pairs. However, its general robustness does not extend to some difficult datasets, such as those involving cancer outcome prediction, which may be due to the relatively simple voting scheme used by the classifier. We believe that the performance can be enhanced by separating its effective feature selection component and combining it with a powerful classifier such as the support vector machine (SVM). More generally the top scoring pairs generated by the k-TSP ranking algorithm can be used as a dimensionally reduced su

SUBMITTER: Shi P 

PROVIDER: S-EPMC3223741 | biostudies-literature | 2011 Sep

REPOSITORIES: biostudies-literature